Changeset a67d19 for src/analyzer.cpp
- Timestamp:
- Apr 22, 2010, 2:00:03 PM (15 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- 299554
- Parents:
- 6613ec
- File:
-
- 1 edited
Legend:
- Unmodified
- Added
- Removed
-
src/analyzer.cpp
r6613ec ra67d19 63 63 int counter = 0; 64 64 65 Log() << Verbose(0) << "ANOVA Analyzer" << endl;66 Log() << Verbose(0) << "==============" << endl;65 DoLog(0) && (Log() << Verbose(0) << "ANOVA Analyzer" << endl); 66 DoLog(0) && (Log() << Verbose(0) << "==============" << endl); 67 67 68 68 // Get the command line options 69 69 if (argc < 4) { 70 Log() << Verbose(0) << "Usage: " << argv[0] << " <inputdir> <prefix> <outputdir> [elementsdb]" << endl;71 Log() << Verbose(0) << "<inputdir>\ttherein the output of a molecuilder fragmentation is expected, each fragment with a subdir containing an energy.all and a forces.all file." << endl;72 Log() << Verbose(0) << "<prefix>\tprefix of energy and forces file." << endl;73 Log() << Verbose(0) << "<outputdir>\tcreated plotfiles and datafiles are placed into this directory " << endl;74 Log() << Verbose(0) << "[elementsdb]\tpath to elements database, needed for shieldings." << endl;70 DoLog(0) && (Log() << Verbose(0) << "Usage: " << argv[0] << " <inputdir> <prefix> <outputdir> [elementsdb]" << endl); 71 DoLog(0) && (Log() << Verbose(0) << "<inputdir>\ttherein the output of a molecuilder fragmentation is expected, each fragment with a subdir containing an energy.all and a forces.all file." << endl); 72 DoLog(0) && (Log() << Verbose(0) << "<prefix>\tprefix of energy and forces file." << endl); 73 DoLog(0) && (Log() << Verbose(0) << "<outputdir>\tcreated plotfiles and datafiles are placed into this directory " << endl); 74 DoLog(0) && (Log() << Verbose(0) << "[elementsdb]\tpath to elements database, needed for shieldings." << endl); 75 75 return 1; 76 76 } else { … … 81 81 82 82 if (argc > 4) { 83 Log() << Verbose(0) << "Loading periodentafel." << endl;83 DoLog(0) && (Log() << Verbose(0) << "Loading periodentafel." << endl); 84 84 periode = Malloc<periodentafel>(1, "main - periode"); 85 85 periode->LoadPeriodentafel(argv[4]); … … 248 248 // +++++++++++++++ ANALYZING ++++++++++++++++++++++++++++++ 249 249 250 Log() << Verbose(0) << "Analyzing ..." << endl;250 DoLog(0) && (Log() << Verbose(0) << "Analyzing ..." << endl); 251 251 252 252 // ======================================= Creating the data files ============================================================== … … 559 559 delete(periode); 560 560 Free(&dir); 561 Log() << Verbose(0) << "done." << endl;561 DoLog(0) && (Log() << Verbose(0) << "done." << endl); 562 562 return 0; 563 563 };
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