Changeset 47d041 for src/Fragmentation/analyzer.cpp
- Timestamp:
- Nov 3, 2011, 7:44:01 PM (14 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, Candidate_v1.7.0, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- 41a467
- Parents:
- 50e4e5
- git-author:
- Frederik Heber <heber@…> (10/27/11 11:53:58)
- git-committer:
- Frederik Heber <heber@…> (11/03/11 19:44:01)
- File:
-
- 1 edited
-
src/Fragmentation/analyzer.cpp (modified) (6 diffs)
Legend:
- Unmodified
- Added
- Removed
-
src/Fragmentation/analyzer.cpp
r50e4e5 r47d041 79 79 int counter = 0; 80 80 81 DoLog(0) && (Log() << Verbose(0) << "ANOVA Analyzer" << endl);82 DoLog(0) && (Log() << Verbose(0) << "==============" << endl);81 LOG(0, "ANOVA Analyzer"); 82 LOG(0, "=============="); 83 83 84 84 // Get the command line options 85 85 if (argc < 4) { 86 DoLog(0) && (Log() << Verbose(0) << "Usage: " << argv[0] << " <inputdir> <prefix> <outputdir> [elementsdb]" << endl);87 DoLog(0) && (Log() << Verbose(0) << "<inputdir>\ttherein the output of a molecuilder fragmentation is expected, each fragment with a subdir containing an energy.all and a forces.all file." << endl);88 DoLog(0) && (Log() << Verbose(0) << "<prefix>\tprefix of energy and forces file." << endl);89 DoLog(0) && (Log() << Verbose(0) << "<outputdir>\tcreated plotfiles and datafiles are placed into this directory " << endl);90 DoLog(0) && (Log() << Verbose(0) << "[elementsdb]\tpath to elements database, needed for shieldings." << endl);86 LOG(0, "Usage: " << argv[0] << " <inputdir> <prefix> <outputdir> [elementsdb]"); 87 LOG(0, "<inputdir>\ttherein the output of a molecuilder fragmentation is expected, each fragment with a subdir containing an energy.all and a forces.all file."); 88 LOG(0, "<prefix>\tprefix of energy and forces file."); 89 LOG(0, "<outputdir>\tcreated plotfiles and datafiles are placed into this directory "); 90 LOG(0, "[elementsdb]\tpath to elements database, needed for shieldings."); 91 91 return 1; 92 92 } else { … … 97 97 98 98 if (argc > 4) { 99 DoLog(0) && (Log() << Verbose(0) << "Loading periodentafel." << endl);99 LOG(0, "Loading periodentafel."); 100 100 periode = new periodentafel; 101 101 periode->LoadPeriodentafel(argv[4]); … … 112 112 if (!Hcorrection.ParseFragmentMatrix(argv[1], "", HCORRECTIONSUFFIX,0,0)) { 113 113 NoHCorrection = true; 114 DoeLog(2) && (eLog()<< Verbose(2) << "No HCorrection file found, skipping these." << endl);114 ELOG(2, "No HCorrection file found, skipping these."); 115 115 } 116 116 … … 118 118 if (!Hessian.ParseFragmentMatrix(argv[1], dir, HessianSuffix,0,0)) { 119 119 NoHessian = true; 120 DoeLog(2) && (eLog()<< Verbose(2) << "No Hessian file found, skipping these." << endl);120 ELOG(2, "No Hessian file found, skipping these."); 121 121 } 122 122 if (!Time.ParseFragmentMatrix(argv[1], dir, TimeSuffix, 10,1)) { 123 123 NoTime = true; 124 DoeLog(2) && (eLog()<< Verbose(2) << "No speed file found, skipping these." << endl);124 ELOG(2, "No speed file found, skipping these."); 125 125 } 126 126 if (periode != NULL) { // also look for PAS values … … 264 264 // +++++++++++++++ ANALYZING ++++++++++++++++++++++++++++++ 265 265 266 DoLog(0) && (Log() << Verbose(0) << "Analyzing ..." << endl);266 LOG(0, "Analyzing ..."); 267 267 268 268 // ======================================= Creating the data files ============================================================== … … 575 575 delete(periode); 576 576 delete[](dir); 577 DoLog(0) && (Log() << Verbose(0) << "done." << endl);577 LOG(0, "done."); 578 578 return 0; 579 579 };
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