Changeset 10f641 for src/parser.cpp
- Timestamp:
- Apr 28, 2008, 11:36:11 AM (18 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, Candidate_v1.7.0, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- 140e34
- Parents:
- b0a0c3
- File:
-
- 1 edited
-
src/parser.cpp (modified) (8 diffs)
Legend:
- Unmodified
- Added
- Removed
-
src/parser.cpp
rb0a0c3 r10f641 43 43 stringstream line; 44 44 45 line << argv[1] << F actorsFile;45 line << argv[1] << FRAGMENTPREFIX << TEFACTORSFILE; 46 46 return FilePresent(line.str().c_str()); 47 47 }; … … 106 106 // count the number of matrices 107 107 MatrixCounter = -1; // we count one too much 108 line << name << F actorsFile;108 line << name << FRAGMENTPREFIX << TEFACTORSFILE; 109 109 input.open(line.str().c_str(), ios::in); 110 110 if (input == NULL) { … … 127 127 FragmentNumber = FixedDigitNumber(MatrixCounter, i); 128 128 if (i != MatrixCounter) 129 line << name << F ragmentPrefix<< FragmentNumber << "/" << prefix << suffix;129 line << name << FRAGMENTPREFIX << FragmentNumber << "/" << prefix << suffix; 130 130 else 131 131 line << name << prefix << suffix; … … 329 329 stringstream line; 330 330 FragmentNumber = FixedDigitNumber(MatrixCounter, i); 331 line << name << F ragmentPrefix<< FragmentNumber << "/" << prefix;331 line << name << FRAGMENTPREFIX << FragmentNumber << "/" << prefix; 332 332 Free((void **)&FragmentNumber, "*FragmentNumber"); 333 333 output.open(line.str().c_str(), ios::out); … … 424 424 cout << "Parsing force indices." << endl; 425 425 Indices = (int **) Malloc(sizeof(int *)*(MatrixCounter+1), "ForceMatrix::ParseIndices: **Indices"); 426 line << name << F orcesFile;426 line << name << FRAGMENTPREFIX << FORCESFILE; 427 427 input.open(line.str().c_str(), ios::in); 428 428 //cout << "Opening " << line.str() << " ... " << input << endl; … … 439 439 Indices[i] = (int *) Malloc(sizeof(int)*RowCounter[i], "ForceMatrix::ParseIndices: *Indices[]"); 440 440 FragmentNumber = FixedDigitNumber(MatrixCounter, i); 441 cout << F ragmentPrefix<< FragmentNumber << "[" << RowCounter[i] << "]:";441 cout << FRAGMENTPREFIX << FragmentNumber << "[" << RowCounter[i] << "]:"; 442 442 Free((void **)&FragmentNumber, "ForceMatrix::ParseIndices: *FragmentNumber"); 443 443 for(int j=0;(j<RowCounter[i]) && (!line.eof());j++) { … … 521 521 cout << "Parsing key sets." << endl; 522 522 KeySets = (int **) Malloc(sizeof(int *)*FragmentCounter, "KeySetsContainer::ParseKeySets: **KeySets"); 523 line << name << KeySetsFile;523 line << name << FRAGMENTPREFIX << KEYSETFILE; 524 524 input.open(line.str().c_str(), ios::in); 525 525 if (input == NULL) { … … 535 535 KeySets[i] = (int *) Malloc(sizeof(int)*AtomCounter[i], "KeySetsContainer::ParseKeySets: *KeySets[]"); 536 536 FragmentNumber = FixedDigitNumber(FragmentCounter, i); 537 cout << F ragmentPrefix<< FragmentNumber << "[" << AtomCounter[i] << "]:";537 cout << FRAGMENTPREFIX << FragmentNumber << "[" << AtomCounter[i] << "]:"; 538 538 Free((void **)&FragmentNumber, "KeySetsContainer::ParseKeySets: *FragmentNumber"); 539 539 input.getline(filename, 1023);
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