Changes in src/World.cpp [388ddd:46ce1c]

File:

• src/World.cpp (modified) (3 diffs)

src/World.cpp

@@ -234 +234 @@
   if (_step != WorldTime::getTime()) {
     const unsigned int oldstep = WorldTime::getTime();
-    // set new time
+
+    // 1. copy bond graph (such not each addBond causes GUI update)
+    if (!areBondsPresent(_step)) {
+//      AtomComposite Set = getAllAtoms();
+//      BG->cleanAdjacencyList(Set);
+      copyBondgraph(oldstep, _step);
+    }
+
+    // 2. set new time
     WorldTime::getInstance().setTime(_step);
+
     // TODO: removed when BondGraph creates the adjacency
-    // 1. remove all of World's molecules
+    // 3. remove all of World's molecules
     for (MoleculeIterator iter = getMoleculeIter();
         getMoleculeIter() != moleculeEnd();
@@ -244 +253 @@
       destroyMolecule(*iter);
     }
-    // 2. copy bond graph
-    if (!areBondsPresent(_step)) {
-//      AtomComposite Set = getAllAtoms();
-//      BG->cleanAdjacencyList(Set);
-      copyBondgraph(oldstep, _step);
-    }
-
-    // 3. scan for connected subgraphs => molecules
+
+    // 4. scan for connected subgraphs => molecules
     DepthFirstSearchAnalysis DFS;
     DFS();
@@ -879 +882 @@
   delete configuration;
   delete Thermostats;
+  delete homologies;
 }